diff --git a/CMake/CheckHaveGetopt.cmake b/CMake/CheckHaveGetopt.cmake
new file mode 100644
index 00000000..c0fd5dcf
--- /dev/null
+++ b/CMake/CheckHaveGetopt.cmake
@@ -0,0 +1,15 @@
+# Check if getopt is present:
+INCLUDE (${CMAKE_ROOT}/Modules/CheckIncludeFile.cmake)
+SET(DONT_HAVE_GETOPT 1)
+IF(UNIX) #I am pretty sure only *nix sys have this anyway
+  CHECK_INCLUDE_FILE("getopt.h" CMAKE_HAVE_GETOPT_H)
+  # Seems like we need the contrary:
+  IF(CMAKE_HAVE_GETOPT_H)
+    SET(DONT_HAVE_GETOPT 0)
+  ENDIF(CMAKE_HAVE_GETOPT_H)
+ENDIF(UNIX)
+
+IF(DONT_HAVE_GETOPT)
+  ADD_DEFINITIONS(-DDONT_HAVE_GETOPT)
+ENDIF(DONT_HAVE_GETOPT)
+
diff --git a/CMake/OpenJPEG3DConfig.cmake.in b/CMake/OpenJPEG3DConfig.cmake.in
new file mode 100644
index 00000000..633c0935
--- /dev/null
+++ b/CMake/OpenJPEG3DConfig.cmake.in
@@ -0,0 +1,48 @@
+#-----------------------------------------------------------------------------
+#
+# OPENJPEG3DConfig.cmake - CMake configuration file for external projects.
+#
+# This file is configured by OPENJPEG3D and used by the UseOPENJPEG3D.cmake
+# module to load OPENJPEG3D's settings for an external project.
+@OPENJPEG3D_CONFIG_INSTALL_ONLY@
+# The OPENJPEG3D version number.
+SET(OPENJPEG3D_MAJOR_VERSION "@OPENJPEG3D_VERSION_MAJOR@")
+SET(OPENJPEG3D_MINOR_VERSION "@OPENJPEG3D_VERSION_MINOR@")
+SET(OPENJPEG3D_BUILD_VERSION "@OPENJPEG3D_VERSION_BUILD@")
+
+# The libraries.
+SET(OPENJPEG3D_LIBRARIES "@OPENJPEG3D_LIBRARIES@")
+
+# The CMake macros dir.
+SET(OPENJPEG3D_CMAKE_DIR "@OPENJPEG3D_CMAKE_DIR_CONFIG@")
+
+# The configuration options.
+SET(OPENJPEG3D_BUILD_SHARED_LIBS "@OPENJPEG3D_BUILD_SHARED_LIBS@")
+
+# The "use" file.
+SET(OPENJPEG3D_USE_FILE "@OPENJPEG3D_USE_FILE_CONFIG@")
+
+get_filename_component(SELF_DIR "${CMAKE_CURRENT_LIST_FILE}" PATH)
+if(EXISTS ${SELF_DIR}/OpenJPEG3DTargets.cmake)
+  # This is an install tree
+  include(${SELF_DIR}/OpenJPEG3DTargets.cmake)
+  get_filename_component(OPENJPEG3D_INCLUDE_ROOT "${SELF_DIR}/../../@OPENJPEG3D_INSTALL_INCLUDE_DIR@" ABSOLUTE)
+  set(OPENJPEG3D_INCLUDE_DIRS ${OPENJPEG3D_INCLUDE_ROOT})
+
+else(EXISTS ${SELF_DIR}/OpenJPEG3DTargets.cmake)
+  if(EXISTS ${SELF_DIR}/OpenJPEG3DExports.cmake)
+    # This is a build tree
+    SET( OPENJPEG3D_INCLUDE_DIRS @OPENJPEG3D_INCLUDE_PATH@)
+
+    include(${SELF_DIR}/OpenJPEG3DExports.cmake)
+
+  else(EXISTS ${SELF_DIR}/OpenJPEG3DExports.cmake)
+    message(FATAL_ERROR "ooops")
+  endif(EXISTS ${SELF_DIR}/OpenJPEG3DExports.cmake)
+endif(EXISTS ${SELF_DIR}/OpenJPEG3DTargets.cmake)
+
+set(OPENJPEG3D_USE_FILE ${SELF_DIR}/UseOPENJPEG3D.cmake)
+
+# Backward compatible part:
+SET(OPENJPEG3D_FOUND       TRUE)
+
diff --git a/CMakeLists.txt b/CMakeLists.txt
index 1491d1c3..28e3cbfa 100644
--- a/CMakeLists.txt
+++ b/CMakeLists.txt
@@ -1,15 +1,223 @@
-# jp3d
+# Main CMakeLists.txt to build the OpenJPEG3D 3D project using CMake (www.cmake.org)
+# Written by Mathieu Malaterre
+
+# This CMake project will by default create a library called openjpeg3d3d
+# But if you want to use this project within your own (CMake) project
+# you will eventually like to prefix the library to avoid linking confusion
+# For this purpose you can define a CMake var: OPENJPEG3D_NAMESPACE to whatever you like
+# e.g.:
+# SET(OPENJPEG3D_NAMESPACE "GDCMOPENJPEG3D")
+CMAKE_MINIMUM_REQUIRED(VERSION 2.6)
+
+IF(COMMAND CMAKE_POLICY)
+  CMAKE_POLICY(SET CMP0003 NEW)
+ENDIF(COMMAND CMAKE_POLICY)
+
+IF(NOT OPENJPEG3D_NAMESPACE)
+  SET(OPENJPEG3D_NAMESPACE "OPENJPEG3D")
+  SET(OPENJPEG3D_STANDALONE 1)
+ENDIF(NOT OPENJPEG3D_NAMESPACE)
+# In all cases:
+STRING(TOLOWER ${OPENJPEG3D_NAMESPACE} OPENJPEG3D_LIBRARY_NAME)
+
+PROJECT(${OPENJPEG3D_NAMESPACE} C)
+
+# Do full dependency headers.
+INCLUDE_REGULAR_EXPRESSION("^.*$")
+
+#-----------------------------------------------------------------------------
+# OPENJPEG3D version number, useful for packaging and doxygen doc:
+SET(OPENJPEG3D_VERSION_MAJOR 1)
+SET(OPENJPEG3D_VERSION_MINOR 3)
+SET(OPENJPEG3D_VERSION_BUILD 0)
+SET(OPENJPEG3D_VERSION
+  "${OPENJPEG3D_VERSION_MAJOR}.${OPENJPEG3D_VERSION_MINOR}.${OPENJPEG3D_VERSION_BUILD}")
+SET(PACKAGE_VERSION
+  "${OPENJPEG3D_VERSION_MAJOR}.${OPENJPEG3D_VERSION_MINOR}.${OPENJPEG3D_VERSION_BUILD}")
+SET(OPENJPEG3D_LIBRARY_PROPERTIES
+  VERSION   "${OPENJPEG3D_VERSION_MAJOR}.${OPENJPEG3D_VERSION_MINOR}.${OPENJPEG3D_VERSION_BUILD}"
+  SOVERSION "${OPENJPEG3D_VERSION_MAJOR}"
+)
+# You will also need to define a value for the following variables:
+# OPENJPEG3D_INSTALL_BIN_DIR          - binary dir (executables)
+# OPENJPEG3D_INSTALL_LIB_DIR          - library dir (libs)
+# OPENJPEG3D_INSTALL_DATA_DIR         - share dir (say, examples, data, etc)
+# OPENJPEG3D_INSTALL_INCLUDE_DIR      - include dir (headers)
+
+
+# On Visual Studio 8 MS deprecated C. This removes all 1.276E1265 security
+# warnings
+IF(WIN32)
+  IF(NOT BORLAND)
+    IF(NOT CYGWIN)
+      IF(NOT MINGW)
+        IF(NOT ITK_ENABLE_VISUAL_STUDIO_DEPRECATED_C_WARNINGS)
+          ADD_DEFINITIONS(
+            -D_CRT_FAR_MAPPINGS_NO_DEPRECATE
+            -D_CRT_IS_WCTYPE_NO_DEPRECATE
+            -D_CRT_MANAGED_FP_NO_DEPRECATE
+            -D_CRT_NONSTDC_NO_DEPRECATE
+            -D_CRT_SECURE_NO_DEPRECATE
+            -D_CRT_SECURE_NO_DEPRECATE_GLOBALS
+            -D_CRT_SETERRORMODE_BEEP_SLEEP_NO_DEPRECATE
+            -D_CRT_TIME_FUNCTIONS_NO_DEPRECATE
+            -D_CRT_VCCLRIT_NO_DEPRECATE
+            -D_SCL_SECURE_NO_DEPRECATE
+            )
+        ENDIF(NOT ITK_ENABLE_VISUAL_STUDIO_DEPRECATED_C_WARNINGS)
+      ENDIF(NOT MINGW)
+    ENDIF(NOT CYGWIN)
+  ENDIF(NOT BORLAND)
+ENDIF(WIN32)
+
+
+# --------------------------------------------------------------------------
+# Install directories
+
+STRING(TOLOWER ${PROJECT_NAME} projectname)
+SET(subdir "${projectname}-${OPENJPEG3D_VERSION_MAJOR}.${OPENJPEG3D_VERSION_MINOR}")
+
+IF(NOT OPENJPEG3D_INSTALL_BIN_DIR)
+  SET(OPENJPEG3D_INSTALL_BIN_DIR "bin")
+ENDIF(NOT OPENJPEG3D_INSTALL_BIN_DIR)
+
+IF(NOT OPENJPEG3D_INSTALL_LIB_DIR)
+  SET(OPENJPEG3D_INSTALL_LIB_DIR "lib")
+ENDIF(NOT OPENJPEG3D_INSTALL_LIB_DIR)
+
+IF(NOT OPENJPEG3D_INSTALL_DATA_DIR)
+  SET(OPENJPEG3D_INSTALL_DATA_DIR "share/${subdir}")
+ENDIF(NOT OPENJPEG3D_INSTALL_DATA_DIR)
+
+IF(NOT OPENJPEG3D_INSTALL_INCLUDE_DIR)
+  SET(OPENJPEG3D_INSTALL_INCLUDE_DIR "include/")
+ENDIF(NOT OPENJPEG3D_INSTALL_INCLUDE_DIR)
+
+IF(NOT OPENJPEG3D_INSTALL_MAN_DIR)
+  SET(OPENJPEG3D_INSTALL_MAN_DIR "share/man/")
+ENDIF(NOT OPENJPEG3D_INSTALL_MAN_DIR)
+
+IF(NOT OPENJPEG3D_INSTALL_DOC_DIR)
+  SET(OPENJPEG3D_INSTALL_DOC_DIR "share/doc/${subdir}")
+ENDIF(NOT OPENJPEG3D_INSTALL_DOC_DIR)
+
+IF(NOT OPENJPEG3D_INSTALL_PACKAGE_DIR)
+  SET(OPENJPEG3D_INSTALL_PACKAGE_DIR ${OPENJPEG3D_INSTALL_LIB_DIR}/${subdir}
+    CACHE INTERNAL "")
+ENDIF(NOT OPENJPEG3D_INSTALL_PACKAGE_DIR)
+
+#-----------------------------------------------------------------------------
+# Test for some required system information.
+INCLUDE (${CMAKE_ROOT}/Modules/CMakeBackwardCompatibilityC.cmake)
+
+#-----------------------------------------------------------------------------
+# Test for getopt being available in this system
+INCLUDE (${PROJECT_SOURCE_DIR}/CMake/CheckHaveGetopt.cmake )
+
+#-----------------------------------------------------------------------------
+# OpenJPEG3D build configuration options.
+OPTION(BUILD_SHARED_LIBS "Build OpenJPEG3D shared library and link executables against it." ON)
+
+#-----------------------------------------------------------------------------
+SET (EXECUTABLE_OUTPUT_PATH ${OPENJPEG3D_BINARY_DIR}/bin CACHE PATH "Single output directory for building all executables.")
+SET (LIBRARY_OUTPUT_PATH ${OPENJPEG3D_BINARY_DIR}/bin CACHE PATH "Single output directory for building all libraries.")
+MARK_AS_ADVANCED(LIBRARY_OUTPUT_PATH EXECUTABLE_OUTPUT_PATH)
+
+
+# configure name mangling to allow multiple libraries to coexist
+# peacefully
+IF(EXISTS ${CMAKE_CURRENT_SOURCE_DIR}/openjpeg3d_mangle.h.in)
+SET(MANGLE_PREFIX ${OPENJPEG3D_LIBRARY_NAME})
+CONFIGURE_FILE(${CMAKE_CURRENT_SOURCE_DIR}/openjpeg3d_mangle.h.in
+               ${CMAKE_CURRENT_BINARY_DIR}/openjpeg3d_mangle.h
+               @ONLY IMMEDIATE)
+ENDIF(EXISTS ${CMAKE_CURRENT_SOURCE_DIR}/openjpeg3d_mangle.h.in)
+
+#-----------------------------------------------------------------------------
+# pkgconfig support
+CONFIGURE_FILE(${CMAKE_CURRENT_SOURCE_DIR}/libopenjpeg3d.pc.cmake ${CMAKE_CURRENT_BINARY_DIR}/libopenjpeg3d.pc @ONLY)
+INSTALL( FILES  ${CMAKE_CURRENT_BINARY_DIR}/libopenjpeg3d.pc DESTINATION ${OPENJPEG3D_INSTALL_LIB_DIR}/pkgconfig )
+
+#-----------------------------------------------------------------------------
+# Always build the library
+INCLUDE_DIRECTORIES(BEFORE ${CMAKE_CURRENT_BINARY_DIR})
+SUBDIRS(libopenjpeg3d)
+
+#-----------------------------------------------------------------------------
+# Compiler specific flags:
+IF(CMAKE_COMPILER_IS_GNUCC)
+  # For all builds, make sure openjpeg3d is std99 compliant:
+  # SET(CMAKE_C_FLAGS "-Wall -std=c99 ${CMAKE_C_FLAGS}") # FIXME: this setting prevented us from setting a coverage build.
+  # Do not use ffast-math for all build, it would produce incorrect results, only set for release:
+  SET(CMAKE_C_FLAGS_RELEASE "-ffast-math ${CMAKE_C_FLAGS_RELEASE}")
+ENDIF(CMAKE_COMPILER_IS_GNUCC)
+
+# install all targets referenced as OPENJPEG3DTargets
+install(EXPORT OpenJPEG3DTargets DESTINATION ${OPENJPEG3D_INSTALL_PACKAGE_DIR})
+CONFIGURE_FILE( ${OPENJPEG3D_SOURCE_DIR}/CMake/OpenJPEG3DConfig.cmake.in
+  ${OPENJPEG3D_BINARY_DIR}/OpenJPEG3DConfig.cmake
+  @ONLY
+)
+INSTALL( FILES ${OPENJPEG3D_BINARY_DIR}/OpenJPEG3DConfig.cmake
+  DESTINATION ${OPENJPEG3D_INSTALL_PACKAGE_DIR}
+)
+# install CHANGES and LICENSE
+INSTALL(
+  FILES       LICENSE
+  DESTINATION ${OPENJPEG3D_INSTALL_DOC_DIR})
+#
+FIND_FILE(HAVE_STRINGS_H_FOUND strings.h)
+IF(NOT HAVE_STRINGS_H_FOUND STREQUAL "HAVE_STRINGS_H_FOUND-NOTFOUND")
+  FIND_FILE(HAVE_STRINGS_H strings.h)
+  SET(HAS_STRINGS_H 1)
+ENDIF()
+FIND_FILE(HAVE_INTTYPES_H_FOUND inttypes.h)
+IF(NOT HAVE_INTTYPES_H_FOUND STREQUAL "HAVE_INTTYPES_H_FOUND-NOTFOUND")
+  FIND_FILE(HAVE_INTTYPES_H inttypes.h)
+  SET(HAS_INTTYPES_H 1)
+ENDIF()
+FIND_FILE(HAVE_MEMORY_H_FOUND memory.h)
+IF(NOT HAVE_MEMORY_H_FOUND STREQUAL "HAVE_MEMORY_H_FOUND-NOTFOUND")
+  FIND_FILE(HAVE_MEMORY_H memory.h)
+  SET(HAS_MEMORY_H 1)
+ENDIF()
+FIND_FILE(HAVE_STDINT_H_FOUND stdint.h)
+IF(NOT HAVE_STDINT_H_FOUND STREQUAL "HAVE_STDINT_H_FOUND-NOTFOUND")
+  FIND_FILE(HAVE_STDINT_H stdint.h)
+  SET(HAS_STDINT_H 1)
+ENDIF()
+FIND_FILE(HAVE_STDLIB_H_FOUND stdlib.h)
+IF(NOT HAVE_STDLIB_H_FOUND STREQUAL "HAVE_STDLIB_H_FOUND-NOTFOUND")
+  FIND_FILE(HAVE_STDLIB_H stdlib.h)
+  SET(HAS_STDLIB_H 1)
+ENDIF()
+FIND_FILE(HAVE_STRING_H_FOUND string.h)
+IF(NOT HAVE_STRING_H_FOUND STREQUAL "HAVE_STRING_H_FOUND-NOTFOUND")
+  FIND_FILE(HAVE_STRING_H string.h)
+  SET(HAS_STRING_H 1)
+ENDIF()
+FIND_FILE(HAVE_SYS_STAT_H_FOUND sys/stat.h)
+IF(NOT HAVE_SYS_STAT_H_FOUND STREQUAL "HAVE_SYS_STAT_H_FOUND-NOTFOUND")
+  FIND_FILE(HAVE_SYS_STAT_H sys/stat.h)
+  SET(HAS_SYS_STAT_H 1)
+ENDIF()
+FIND_FILE(HAVE_SYS_TYPES_H_FOUND sys/types.h)
+IF(NOT HAVE_SYS_TYPES_H_FOUND STREQUAL "HAVE_SYS_TYPES_H_FOUND-NOTFOUND")
+  FIND_FILE(HAVE_SYS_TYPES_H sys/types.h)
+  SET(HAS_SYS_TYPES_H 1)
+ENDIF()
+FIND_FILE(HAVE_UNISTD_H_FOUND unistd.h)
+IF(NOT HAVE_UNISTD_H_FOUND STREQUAL "HAVE_UNISTD_H_FOUND-NOTFOUND")
+  FIND_FILE(HAVE_UNISTD_H unistd.h)
+  SET(HAS_UNISTD_H 1)
+ENDIF()
+
 
 # Headers file are located here:
 INCLUDE_DIRECTORIES(
   ${CMAKE_CURRENT_SOURCE_DIR}/codec
-  ${CMAKE_CURRENT_SOURCE_DIR}/libjp3dvm
+  ${CMAKE_CURRENT_SOURCE_DIR}/libopenjpeg3d
   )
 
 
-SUBDIRS(
-  libjp3dvm
-  codec
-)
-
-
+SUBDIRS(codec)
diff --git a/INSTALL b/INSTALL
new file mode 100644
index 00000000..3f4e3dd1
--- /dev/null
+++ b/INSTALL
@@ -0,0 +1,25 @@
+
+How to build and install openjpeg3d binaries
+==========================================
+
+REQUIREMENT : cmake (see www.cmake.org)
+
+Type:
+  cmake .
+  make
+
+If you are root:
+  make install
+  make clean
+
+else:
+  sudo make install
+  make clean
+
+Binaries are located in the 'bin' directory.
+
+Main available cmake flags:
+* To specify the install path: '-DCMAKE_INSTALL_PREFIX=/path'
+* To build the shared libraries and links the executables against it: '-DBUILD_SHARED_LIBS:bool=on' (default: 'ON')
+  Note: when using this option, static libraries are not built and executables are dynamically linked.
+
diff --git a/LICENSE.txt b/LICENSE
similarity index 100%
rename from LICENSE.txt
rename to LICENSE
diff --git a/Makefile.nix b/Makefile.nix
deleted file mode 100644
index 5b0796f3..00000000
--- a/Makefile.nix
+++ /dev/null
@@ -1,108 +0,0 @@
-#jp3d Makefile
-include ../config.nix
-
-TARGET  = openjp3dvm
-COMPILERFLAGS = -O3 -Wall -ffast-math -std=c99 -fPIC
-
-SRCS = ./libjp3dvm/bio.c ./libjp3dvm/cio.c ./libjp3dvm/dwt.c \
-  ./libjp3dvm/event.c ./libjp3dvm/jp3d.c ./libjp3dvm/jp3d_lib.c \
-  ./libjp3dvm/volume.c ./libjp3dvm/mct.c ./libjp3dvm/mqc.c \
-  ./libjp3dvm/openjpeg.c ./libjp3dvm/pi.c ./libjp3dvm/raw.c \
-  ./libjp3dvm/t1.c ./libjp3dvm/t1_3d.c ./libjp3dvm/t2.c \
-  ./libjp3dvm/tcd.c ./libjp3dvm/tgt.c
-
-INCLS = ./libjp3dvm/t1_3d.h ./libjp3dvm/bio.h ./libjp3dvm/cio.h \
-  ./libjp3dvm/dwt.h ./libjp3dvm/event.h ./libjp3dvm/fix.h \
-  ./libjp3dvm/int.h ./libjp3dvm/jp3d.h ./libjp3dvm/jp3d_lib.h \
-  ./libjp3dvm/volume.h ./libjp3dvm/mct.h ./libjp3dvm/mqc.h \
-  ./libjp3dvm/openjpeg3d.h ./libjp3dvm/pi.h ./libjp3dvm/raw.h \
-  ./libjp3dvm/t1.h  ./libjp3dvm/t2.h ./libjp3dvm/tcd.h \
-  ./libjp3dvm/tgt.h ./libjp3dvm/opj_includes.h
-
-INCLUDE = -I.. -Ilibjp3dvm
-
-INSTALL_LIBDIR = $(prefix)/lib
-headerdir = openjpeg3d-$(JP3D_MAJOR).$(JP3D_MINOR)
-INSTALL_INCLUDE = $(prefix)/include/$(headerdir)
-
-# Converts cr/lf to just lf
-DOS2UNIX = dos2unix
-
-LIBRARIES = -lstdc++
-
-MODULES = $(SRCS:.c=.o)
-CFLAGS = $(COMPILERFLAGS) $(INCLUDE)
-
-LIBNAME = lib$(TARGET)
-
-ifeq ($(ENABLE_SHARED),yes)
-SHAREDLIB = $(LIBNAME).so.$(JP3D_MAJOR).$(JP3D_MINOR).$(JP3D_BUILD)
-else
-STATICLIB = $(LIBNAME).a
-endif
-
-default: all
-
-all: Jp3dVM
-	make -C codec -f Makefile.nix all 
-	install -d ../bin
-ifeq ($(ENABLE_SHARED),yes)
-	install -m 755 $(SHAREDLIB) ../bin
-	(cd ../bin && \
-	ln -sf $(SHAREDLIB) $(LIBNAME).so.$(JP3D_MAJOR).$(JP3D_MINOR))
-	(cd ../bin && \
-	ln -sf $(LIBNAME).so.$(JP3D_MAJOR).$(JP3D_MINOR) $(LIBNAME).so)
-else
-	install -m 644 $(STATICLIB) ../bin
-endif
-
-dos2unix:
-	@$(DOS2UNIX) $(SRCS) $(INCLS)
-
-Jp3dVM: $(STATICLIB) $(SHAREDLIB)
-
-.c.o:
-	$(CC) $(CFLAGS) -c $< -o $@
-
-ifeq ($(ENABLE_SHARED),yes)
-$(SHAREDLIB): $(MODULES)
-	$(CC) -s -shared -Wl,-soname,$(LIBNAME) -o $@ $(MODULES) $(LIBRARIES)
-else
-$(STATICLIB): $(MODULES)
-	$(AR) r $@ $(MODULES)
-endif
-
-install: Jp3dVM
-	install -d '$(DESTDIR)$(INSTALL_LIBDIR)'
-ifeq ($(ENABLE_SHARED),yes)
-	install -m 755 -o root -g root $(SHAREDLIB) '$(DESTDIR)$(INSTALL_LIBDIR)'
-	(cd $(DESTDIR)$(INSTALL_LIBDIR) &&  \
-	ln -sf $(SHAREDLIB) $(LIBNAME).so.$(JP3D_MAJOR).$(JP3D_MINOR) )
-	(cd $(DESTDIR)$(INSTALL_LIBDIR) && \
-	ln -sf $(LIBNAME).so.$(JP3D_MAJOR).$(JP3D_MINOR) $(LIBNAME).so )
-else
-	install -m 644 -o root -g root $(STATICLIB) '$(DESTDIR)$(INSTALL_LIBDIR)'
-	(cd $(DESTDIR)$(INSTALL_LIBDIR) && ranlib $(STATICLIB))
-endif
-	install -d $(DESTDIR)$(INSTALL_INCLUDE)
-	rm -f $(DESTDIR)$(INSTALL_INCLUDE)/openjpeg3d.h
-	install -m 644 -o root -g root libjp3dvm/openjpeg3d.h \
-	$(DESTDIR)$(INSTALL_INCLUDE)/openjpeg3d.h
-	(cd $(DESTDIR)$(prefix)/include && \
-	ln -sf $(headerdir)/openjpeg3d.h openjpeg3d.h)
-	make -C codec -f Makefile.nix install
-
-uninstall:
-ifeq ($(ENABLE_SHARED),yes)
-	(cd $(DESTDIR)$(INSTALL_LIBDIR) && \
-	rm -f $(LIBNAME).so $(LIBNAME).so.$(JP3D_MAJOR).$(JP3D_MINOR) $(SHAREDLIB))
-else
-	rm -f $(DESTDIR)$(INSTALL_LIBDIR)/$(STATICLIB)
-endif
-	rm -f $(DESTDIR)$(prefix)/include/openjpeg3d.h
-	rm -rf $(DESTDIR)$(INSTALL_INCLUDE)
-	make -C codec -f Makefile.nix uninstall
-
-clean:
-	rm -f core u2dtmp* $(MODULES) $(STATICLIB) $(SHAREDLIB)
-	make -C codec -f Makefile.nix clean
diff --git a/README.txt b/README
similarity index 89%
rename from README.txt
rename to README
index ce04072e..a22ecb44 100755
--- a/README.txt
+++ b/README
@@ -19,52 +19,18 @@ If you find some bugs or if you have problems using the encoder/decoder, please
 ======================================================
 
 - After decompressing the zip file provided, you should find 
-at least the following files in the created 'jp3d_vm' directory:
+at least the following files in the created 'openjpeg3d' directory:
 
- * libjp3dvm - This directory contains all library related code
+ * libopenjpeg3d - This directory contains all library related code
  * codec - This directory contains all codec related code
  * tcltk - This directory contains the API scripts
  * README - The file you are reading
- * LICENCE - Copyright statement of the JP3D VM software
+ * LICENSE - Copyright statement of the JP3D VM software
 
-2.1. Compiling the source code in Windows
--------------------------------------------
+2.1. Compilation
+-----------------
 
-This version has been compiled with Visual Studio 2003 using
-the projects included in the distribution:
-
- * LibJp3dVM.vcproj - Creates the library with all the JP3D functionalities
- * jp3d_vm_enc.vcproj - Test encoder 
- * jp3d_vm_dec.vcproj - Test decoder 
-
-2.2. Compiling the source code in Unix-like systems
--------------------------------------------
-
-Library compilation
-------------------------
-This version of the library has been tested under the following OS:
-- Fedora Core 
-
-The installation process is as simple as this : 
-1) Enter the 'jp3d_vm' directory
-2) Build the distribution : 
-make
-make install
-3) Clean all files produced during the build process
-make clean
-
-Codec compilation
-------------------------
-Once you've built the library, you should compile the JP3D codec.
-
-1) Go to the 'codec' directory 
-2) Build the encoder and decoder programs:
-
-gcc convert.c volume_to_jp3d.c -o jp3d_vm_enc -I ../libjp3dvm/ -lm -ljp3dvm
-gcc convert.c jp3d_to_volume.c -o jp3d_vm_dec -I ../libjp3dvm/ -lm -ljp3dvm
-
-Note: You should add '-L ../libjp3dvm/' to those lines if you
-did not use the 'install' target (and the 'clean' target neither...).
+see INSTALL file for compilation and installation instructions
 
 3. Running the JP3D VM
 ====================================================
diff --git a/codec/CMakeLists.txt b/codec/CMakeLists.txt
index 6c33b963..437b1e05 100644
--- a/codec/CMakeLists.txt
+++ b/codec/CMakeLists.txt
@@ -4,25 +4,6 @@
 SET(common_SRCS
   convert.c
   )
-# Then check if getopt is present:
-INCLUDE (${CMAKE_ROOT}/Modules/CheckIncludeFile.cmake)
-SET(DONT_HAVE_GETOPT 1)
-IF(UNIX) #I am pretty sure only *nix sys have this anyway
-  CHECK_INCLUDE_FILE("getopt.h" CMAKE_HAVE_GETOPT_H)
-  # Seems like we need the contrary:
-  IF(CMAKE_HAVE_GETOPT_H)
-    SET(DONT_HAVE_GETOPT 0)
-  ENDIF(CMAKE_HAVE_GETOPT_H)
-ENDIF(UNIX)
-
-# If not getopt was found then add it to the lib:
-IF(DONT_HAVE_GETOPT)
-  ADD_DEFINITIONS(-DDONT_HAVE_GETOPT)
-  SET(common_SRCS
-    ${common_SRCS}
-    getopt.c
-  )
-ENDIF(DONT_HAVE_GETOPT)
 
 IF(WIN32)
   IF(BUILD_SHARED_LIBS)
@@ -35,13 +16,14 @@ ENDIF(WIN32)
 # Loop over all executables:
 FOREACH(exe jp3d_to_volume volume_to_jp3d)
   ADD_EXECUTABLE(${exe} ${exe}.c ${common_SRCS})
-  TARGET_LINK_LIBRARIES(${exe} ${OPENJPEG_LIBRARY_NAME}_JP3D) # ${TIFF_LIBRARIES})
+  TARGET_LINK_LIBRARIES(${exe} ${OPENJPEG3D_LIBRARY_NAME})
   # On unix you need to link to the math library:
   IF(UNIX)
     TARGET_LINK_LIBRARIES(${exe} m)
   ENDIF(UNIX)
   # Install exe
-  INSTALL_TARGETS(/bin/ ${exe})
+  INSTALL(TARGETS ${exe}
+    EXPORT OpenJPEG3DTargets
+    DESTINATION ${OPENJPEG3D_INSTALL_BIN_DIR} COMPONENT Applications
+  )
 ENDFOREACH(exe)
-
-
diff --git a/codec/Makefile.nix b/codec/Makefile.nix
deleted file mode 100644
index e34ad39c..00000000
--- a/codec/Makefile.nix
+++ /dev/null
@@ -1,37 +0,0 @@
-#jp3d/codec/Makefile
-
-include ../../config.nix
-
-INSTALL_BIN = $(prefix)/bin
-CFLAGS = -Wall -I. -I../libjp3dvm -lstdc++ # -g -p -pg
-#USERLIBS = -lm
-
-ifeq ($(ENABLE_SHARED),yes)
-ELIB = ../libopenjp3dvm.so.$(JP3D_MAJOR).$(JP3D_MINOR).$(JP3D_BUILD)
-else
-ELIB = ../libopenjp3dvm.a
-endif
-
-all: jp3d_to_volume volume_to_jp3d
-	install -d ../../bin
-	install jp3d_to_volume volume_to_jp3d ../../bin
-
-jp3d_to_volume: jp3d_to_volume.c $(ELIB)
-	$(CC) $(CFLAGS) getopt.c convert.c jp3d_to_volume.c \
-	-o jp3d_to_volume  $(ELIB) $(USERLIBS)
-
-volume_to_jp3d: volume_to_jp3d.c  $(ELIB)
-	$(CC) $(CFLAGS) getopt.c convert.c volume_to_jp3d.c \
-	-o volume_to_jp3d  $(ELIB) $(USERLIBS)
-
-clean:
-	rm -f jp3d_to_volume volume_to_jp3d
-
-install: all
-	install -d $(DESTDIR)$(INSTALL_BIN)
-	install -m 755 -o root -g root jp3d_to_volume $(DESTDIR)$(INSTALL_BIN)
-	install -m 755 -o root -g root volume_to_jp3d $(DESTDIR)$(INSTALL_BIN)
-
-uninstall:
-	rm -f $(DESTDIR)$(INSTALL_BIN)/jp3d_to_volume
-	rm -f $(DESTDIR)$(INSTALL_BIN)/volume_to_jp3d
diff --git a/codec/convert.c b/codec/convert.c
index 7a5d177d..ff4dec3b 100755
--- a/codec/convert.c
+++ b/codec/convert.c
@@ -31,7 +31,7 @@
 #include <stdio.h>
 #include <stdlib.h>
 #include <string.h>
-#include "../libjp3dvm/openjpeg3d.h"
+#include "openjpeg3d.h"
 #ifdef _WIN32
 #include "windirent.h"
 #else
diff --git a/codec/jp3d_to_volume.c b/codec/jp3d_to_volume.c
index 9c5c9adb..e133d876 100755
--- a/codec/jp3d_to_volume.c
+++ b/codec/jp3d_to_volume.c
@@ -33,7 +33,7 @@
 #include <stdlib.h>
 #include <math.h>
 
-#include "../libjp3dvm/openjpeg3d.h"
+#include "openjpeg3d.h"
 #include "getopt.h"
 #include "convert.h"
 
diff --git a/codec/volume_to_jp3d.c b/codec/volume_to_jp3d.c
index e00785d4..acfcd10e 100755
--- a/codec/volume_to_jp3d.c
+++ b/codec/volume_to_jp3d.c
@@ -32,7 +32,7 @@
 #include <string.h>
 #include <stdlib.h>
 
-#include "../libjp3dvm/openjpeg3d.h"
+#include "openjpeg3d.h"
 #include "getopt.h"
 #include "convert.h"
 
diff --git a/libjp3dvm/CMakeLists.txt b/libjp3dvm/CMakeLists.txt
deleted file mode 100644
index 7d265bd2..00000000
--- a/libjp3dvm/CMakeLists.txt
+++ /dev/null
@@ -1,39 +0,0 @@
-IF(UNIX OR CYGWIN)
- ADD_DEFINITIONS(-O3)
-ELSEIF(MINGW)
- ADD_DEFINITIONS(-Os)
-ELSEIF(WIN32)
-  ADD_DEFINITIONS(/Os)
-ENDIF(UNIX OR CYGWIN)
-#
-INCLUDE_REGULAR_EXPRESSION("^.*$")
-# Defines the source code for the library
-SET(JP3DVM_SRCS
-bio.c  cio.c  dwt.c  event.c  jp3d.c  jp3d_lib.c  mct.c  mqc.c  openjpeg.c  pi.c  raw.c  t1.c  t1_3d.c  t2.c  tcd.c  tgt.c  volume.c
-)
-
-# Build the library
-IF(WIN32)
-  IF(BUILD_SHARED_LIBS)
-    ADD_DEFINITIONS(-DOPJ_EXPORTS)
-  ELSE(BUILD_SHARED_LIBS)
-    ADD_DEFINITIONS(-DOPJ_STATIC)
-  ENDIF(BUILD_SHARED_LIBS)
-ENDIF(WIN32)
-ADD_LIBRARY(${OPENJPEG_LIBRARY_NAME}_JP3D ${JP3DVM_SRCS})
-SET_TARGET_PROPERTIES(${OPENJPEG_LIBRARY_NAME}_JP3D
-  PROPERTIES
-    VERSION   1.3.0
-    SOVERSION 1)
-
-# Install library
-INSTALL(TARGETS ${OPENJPEG_LIBRARY_NAME}_JP3D
-DESTINATION ${OPENJPEG_INSTALL_LIB_DIR} COMPONENT Libraries
-)
-
-# Install includes files
-INSTALL(FILES openjpeg3d.h
-  DESTINATION ${OPENJPEG_INSTALL_INCLUDE_DIR}/openjpeg3d-1.3
-)
-INSTALL(CODE
-  "EXECUTE_PROCESS(COMMAND ${CMAKE_COMMAND} -E create_symlink openjpeg3d-1.3/openjpeg3d.h \$ENV{DESTDIR}\${CMAKE_INSTALL_PREFIX}/${OPENJPEG_INSTALL_INCLUDE_DIR}/openjpeg3d.h)")
diff --git a/libopenjpeg3d.pc.cmake b/libopenjpeg3d.pc.cmake
new file mode 100644
index 00000000..203e8d39
--- /dev/null
+++ b/libopenjpeg3d.pc.cmake
@@ -0,0 +1,12 @@
+prefix=@CMAKE_INSTALL_PREFIX@
+bindir=@OPENJPEG3D_INSTALL_BIN_DIR@
+datadir=@OPENJPEG3D_INSTALL_DATA_DIR@
+libdir=@OPENJPEG3D_INSTALL_LIB_DIR@
+includedir=@OPENJPEG3D_INSTALL_INCLUDE_DIR@
+
+Name: openjpeg3d
+Description: JPEG2000 files library
+URL: http://www.openjpeg.org/ 
+Version: @OPENJPEG3D_VERSION@
+Libs: -L${libdir} -lopenjpeg3d
+Cflags: -I${includedir}
diff --git a/libopenjpeg3d/CMakeLists.txt b/libopenjpeg3d/CMakeLists.txt
new file mode 100644
index 00000000..85d15b13
--- /dev/null
+++ b/libopenjpeg3d/CMakeLists.txt
@@ -0,0 +1,37 @@
+
+INCLUDE_REGULAR_EXPRESSION("^.*$")
+
+# Defines the source code for the library
+SET(OPENJPEG3D_SRCS
+bio.c  cio.c  dwt.c  event.c  jp3d.c  jp3d_lib.c  mct.c  mqc.c  openjpeg.c  pi.c  raw.c  t1.c  t1_3d.c  t2.c  tcd.c  tgt.c  volume.c
+)
+
+# Build the library
+IF(WIN32)
+  IF(BUILD_SHARED_LIBS)
+    ADD_DEFINITIONS(-DOPJ_EXPORTS)
+  ELSE(BUILD_SHARED_LIBS)
+    ADD_DEFINITIONS(-DOPJ_STATIC)
+  ENDIF(BUILD_SHARED_LIBS)
+ENDIF(WIN32)
+ADD_LIBRARY(${OPENJPEG3D_LIBRARY_NAME} ${OPENJPEG3D_SRCS})
+IF(UNIX)
+  TARGET_LINK_LIBRARIES(${OPENJPEG3D_LIBRARY_NAME} m)
+ENDIF(UNIX)
+SET_TARGET_PROPERTIES(${OPENJPEG3D_LIBRARY_NAME} PROPERTIES ${OPENJPEG3D_LIBRARY_PROPERTIES})
+
+# Install library
+INSTALL(TARGETS ${OPENJPEG3D_LIBRARY_NAME}
+  EXPORT OpenJPEG3DTargets
+  DESTINATION ${OPENJPEG3D_INSTALL_LIB_DIR} 
+  COMPONENT Libraries
+)
+
+# Install includes files
+INSTALL(FILES openjpeg3d.h
+  DESTINATION ${OPENJPEG3D_INSTALL_INCLUDE_DIR}/${subdir} 
+  COMPONENT Headers
+)
+INSTALL(CODE
+  "EXECUTE_PROCESS(COMMAND ${CMAKE_COMMAND} -E create_symlink ${subdir}/openjpeg3d.h \$ENV{DESTDIR}\${CMAKE_INSTALL_PREFIX}/${OPENJPEG3D_INSTALL_INCLUDE_DIR}/openjpeg3d.h)")
+
diff --git a/libjp3dvm/Makefile.am b/libopenjpeg3d/Makefile.am
similarity index 100%
rename from libjp3dvm/Makefile.am
rename to libopenjpeg3d/Makefile.am
diff --git a/libjp3dvm/bio.c b/libopenjpeg3d/bio.c
similarity index 100%
rename from libjp3dvm/bio.c
rename to libopenjpeg3d/bio.c
diff --git a/libjp3dvm/bio.h b/libopenjpeg3d/bio.h
similarity index 100%
rename from libjp3dvm/bio.h
rename to libopenjpeg3d/bio.h
diff --git a/libjp3dvm/cio.c b/libopenjpeg3d/cio.c
similarity index 100%
rename from libjp3dvm/cio.c
rename to libopenjpeg3d/cio.c
diff --git a/libjp3dvm/cio.h b/libopenjpeg3d/cio.h
similarity index 100%
rename from libjp3dvm/cio.h
rename to libopenjpeg3d/cio.h
diff --git a/libjp3dvm/dwt.c b/libopenjpeg3d/dwt.c
similarity index 100%
rename from libjp3dvm/dwt.c
rename to libopenjpeg3d/dwt.c
diff --git a/libjp3dvm/dwt.h b/libopenjpeg3d/dwt.h
similarity index 100%
rename from libjp3dvm/dwt.h
rename to libopenjpeg3d/dwt.h
diff --git a/libjp3dvm/event.c b/libopenjpeg3d/event.c
similarity index 100%
rename from libjp3dvm/event.c
rename to libopenjpeg3d/event.c
diff --git a/libjp3dvm/event.h b/libopenjpeg3d/event.h
similarity index 100%
rename from libjp3dvm/event.h
rename to libopenjpeg3d/event.h
diff --git a/libjp3dvm/fix.h b/libopenjpeg3d/fix.h
similarity index 100%
rename from libjp3dvm/fix.h
rename to libopenjpeg3d/fix.h
diff --git a/libjp3dvm/int.h b/libopenjpeg3d/int.h
similarity index 100%
rename from libjp3dvm/int.h
rename to libopenjpeg3d/int.h
diff --git a/libjp3dvm/jp3d.c b/libopenjpeg3d/jp3d.c
similarity index 100%
rename from libjp3dvm/jp3d.c
rename to libopenjpeg3d/jp3d.c
diff --git a/libjp3dvm/jp3d.h b/libopenjpeg3d/jp3d.h
similarity index 100%
rename from libjp3dvm/jp3d.h
rename to libopenjpeg3d/jp3d.h
diff --git a/libjp3dvm/jp3d_lib.c b/libopenjpeg3d/jp3d_lib.c
similarity index 100%
rename from libjp3dvm/jp3d_lib.c
rename to libopenjpeg3d/jp3d_lib.c
diff --git a/libjp3dvm/jp3d_lib.h b/libopenjpeg3d/jp3d_lib.h
similarity index 100%
rename from libjp3dvm/jp3d_lib.h
rename to libopenjpeg3d/jp3d_lib.h
diff --git a/libjp3dvm/mct.c b/libopenjpeg3d/mct.c
similarity index 100%
rename from libjp3dvm/mct.c
rename to libopenjpeg3d/mct.c
diff --git a/libjp3dvm/mct.h b/libopenjpeg3d/mct.h
similarity index 100%
rename from libjp3dvm/mct.h
rename to libopenjpeg3d/mct.h
diff --git a/libjp3dvm/mqc.c b/libopenjpeg3d/mqc.c
similarity index 100%
rename from libjp3dvm/mqc.c
rename to libopenjpeg3d/mqc.c
diff --git a/libjp3dvm/mqc.h b/libopenjpeg3d/mqc.h
similarity index 100%
rename from libjp3dvm/mqc.h
rename to libopenjpeg3d/mqc.h
diff --git a/libjp3dvm/openjpeg.c b/libopenjpeg3d/openjpeg.c
similarity index 100%
rename from libjp3dvm/openjpeg.c
rename to libopenjpeg3d/openjpeg.c
diff --git a/libjp3dvm/openjpeg3d.h b/libopenjpeg3d/openjpeg3d.h
similarity index 100%
rename from libjp3dvm/openjpeg3d.h
rename to libopenjpeg3d/openjpeg3d.h
diff --git a/libjp3dvm/opj_includes.h b/libopenjpeg3d/opj_includes.h
similarity index 100%
rename from libjp3dvm/opj_includes.h
rename to libopenjpeg3d/opj_includes.h
diff --git a/libjp3dvm/pi.c b/libopenjpeg3d/pi.c
similarity index 100%
rename from libjp3dvm/pi.c
rename to libopenjpeg3d/pi.c
diff --git a/libjp3dvm/pi.h b/libopenjpeg3d/pi.h
similarity index 100%
rename from libjp3dvm/pi.h
rename to libopenjpeg3d/pi.h
diff --git a/libjp3dvm/raw.c b/libopenjpeg3d/raw.c
similarity index 100%
rename from libjp3dvm/raw.c
rename to libopenjpeg3d/raw.c
diff --git a/libjp3dvm/raw.h b/libopenjpeg3d/raw.h
similarity index 100%
rename from libjp3dvm/raw.h
rename to libopenjpeg3d/raw.h
diff --git a/libjp3dvm/t1.c b/libopenjpeg3d/t1.c
similarity index 100%
rename from libjp3dvm/t1.c
rename to libopenjpeg3d/t1.c
diff --git a/libjp3dvm/t1.h b/libopenjpeg3d/t1.h
similarity index 100%
rename from libjp3dvm/t1.h
rename to libopenjpeg3d/t1.h
diff --git a/libjp3dvm/t1_3d.c b/libopenjpeg3d/t1_3d.c
similarity index 100%
rename from libjp3dvm/t1_3d.c
rename to libopenjpeg3d/t1_3d.c
diff --git a/libjp3dvm/t1_3d.h b/libopenjpeg3d/t1_3d.h
similarity index 100%
rename from libjp3dvm/t1_3d.h
rename to libopenjpeg3d/t1_3d.h
diff --git a/libjp3dvm/t2.c b/libopenjpeg3d/t2.c
similarity index 100%
rename from libjp3dvm/t2.c
rename to libopenjpeg3d/t2.c
diff --git a/libjp3dvm/t2.h b/libopenjpeg3d/t2.h
similarity index 100%
rename from libjp3dvm/t2.h
rename to libopenjpeg3d/t2.h
diff --git a/libjp3dvm/tcd.c b/libopenjpeg3d/tcd.c
similarity index 100%
rename from libjp3dvm/tcd.c
rename to libopenjpeg3d/tcd.c
diff --git a/libjp3dvm/tcd.h b/libopenjpeg3d/tcd.h
similarity index 100%
rename from libjp3dvm/tcd.h
rename to libopenjpeg3d/tcd.h
diff --git a/libjp3dvm/tgt.c b/libopenjpeg3d/tgt.c
similarity index 100%
rename from libjp3dvm/tgt.c
rename to libopenjpeg3d/tgt.c
diff --git a/libjp3dvm/tgt.h b/libopenjpeg3d/tgt.h
similarity index 100%
rename from libjp3dvm/tgt.h
rename to libopenjpeg3d/tgt.h
diff --git a/libjp3dvm/volume.c b/libopenjpeg3d/volume.c
similarity index 100%
rename from libjp3dvm/volume.c
rename to libopenjpeg3d/volume.c
diff --git a/libjp3dvm/volume.h b/libopenjpeg3d/volume.h
similarity index 100%
rename from libjp3dvm/volume.h
rename to libopenjpeg3d/volume.h
diff --git a/tcltk/decoder.tcl b/tcltk/decoder.tcl
index 6fadbb18..98edcde9 100755
--- a/tcltk/decoder.tcl
+++ b/tcltk/decoder.tcl
@@ -1,8 +1,8 @@
 
 namespace eval VMDecoder {
 	variable var
-	variable JP3Ddecoder "../bin/jp3d_vm_dec.exe"
-	#variable JP3Ddecoder "jp3d_vm_dec.exe"
+	variable JP3Ddecoder "../bin/jp3d_to_volume.exe"
+	#variable JP3Ddecoder "jp3d_to_volume.exe"
 }
 
 
diff --git a/tcltk/encoder.tcl b/tcltk/encoder.tcl
index dc174b71..76ad9f33 100755
--- a/tcltk/encoder.tcl
+++ b/tcltk/encoder.tcl
@@ -1,7 +1,7 @@
 
 namespace eval VMEncoder {
 	variable var
-	variable JP3Dencoder "../bin/jp3d_vm_enc.exe"
+	variable JP3Dencoder "../bin/volume_to_jp3d.exe"
 }
 
 proc VMEncoder::create { nb } {