* -PLT switch added to opj_compress
* Add a opj_encoder_set_extra_options() function that
accepts a PLT=YES option, and could be expanded later
for other uses.
-------
Testing with a Sentinel2 10m band, T36JTT_20160914T074612_B02.jp2,
coming from S2A_MSIL1C_20160914T074612_N0204_R135_T36JTT_20160914T081456.SAFE
Decompress it to TIFF:
```
opj_uncompress -i T36JTT_20160914T074612_B02.jp2 -o T36JTT_20160914T074612_B02.tif
```
Recompress it with similar parameters as original:
```
opj_compress -n 5 -c [256,256],[256,256],[256,256],[256,256],[256,256] -t 1024,1024 -PLT -i T36JTT_20160914T074612_B02.tif -o T36JTT_20160914T074612_B02_PLT.jp2
```
Dump codestream detail with GDAL dump_jp2.py utility (https://github.com/OSGeo/gdal/blob/master/gdal/swig/python/samples/dump_jp2.py)
```
python dump_jp2.py T36JTT_20160914T074612_B02.jp2 > /tmp/dump_sentinel2_ori.txt
python dump_jp2.py T36JTT_20160914T074612_B02_PLT.jp2 > /tmp/dump_sentinel2_openjpeg_plt.txt
```
The diff between both show very similar structure, and identical number of packets in PLT markers
Now testing with Kakadu (KDU803_Demo_Apps_for_Linux-x86-64_200210)
Full file decompression:
```
kdu_expand -i T36JTT_20160914T074612_B02_PLT.jp2 -o tmp.tif
Consumed 121 tile-part(s) from a total of 121 tile(s).
Consumed 80,318,806 codestream bytes (excluding any file format) = 5.329697
bits/pel.
Processed using the multi-threaded environment, with
8 parallel threads of execution
```
Partial decompresson (presumably using PLT markers):
```
kdu_expand -i T36JTT_20160914T074612_B02.jp2 -o tmp.pgm -region "{0.5,0.5},{0.01,0.01}"
kdu_expand -i T36JTT_20160914T074612_B02_PLT.jp2 -o tmp2.pgm -region "{0.5,0.5},{0.01,0.01}"
diff tmp.pgm tmp2.pgm && echo "same !"
```
-------
Funded by ESA for S2-MPC project
This adds a opj_set_decoded_components(opj_codec_t *p_codec,
OPJ_UINT32 numcomps, const OPJ_UINT32* comps_indices) function,
and equivalent "opj_decompress -c compno[,compno]*" option.
When specified, neither the MCT transform nor JP2 channel transformations
will be applied.
Tests added for various combinations of whole image vs tiled-based decoding,
full or reduced resolution, use of decode area or not.
PR #975 introduced a check that rejects images that have different bit depth/sign
per compoment in SIZ marker if the JP2 IHDR box has BPC != 255
This didn't work properly if decoding a .j2k file since the new bit added in
opj_cp_t wasn't initialized to the right value.
For clarity, tThis new bit has also been renamed to allow_different_bit_depth_sign
But looking closer at the code, it seems we were already tolerant to inconsistencies.
For example we parsed a JP2 BPCC box even if BPC != 255 (just a warning is emitted)
So failing hard in opj_j2k_read_siz() wouldn't be very inconsistent, and that
alone cannot protect against other issues, so just emit a warning if BPC != 255
and the SIZ marker contains different bit depth/sign per component.
Note: we could also check that the content of JP2 BPCC box is consistant with the one
of the SIZ marker.
Fixes issue on id:000020,sig:06,src:001958,op:flip4,pos:149 that has two
SOT markers for the same tile with the same tile part number, causing
opj_j2k_merge_ppt() to be called several times.
This saves comparing the current pointer with the end of buffer pointer.
This results at least in tiny speed improvement for raw decoding, and
smaller code size for MQC as well.
This kills the remains of the raw.h/.c files that were only used for
decoding. Encoding using the mqc structure already.
The definition of bit-fields with type OPJ_UINT32 caused complilation errors
on IBM iSeries, because OPJ_UINT32 is defined as uint32_t, and
uint32_t is defined as unsigned long in <stdint.h>. The definition of
bit-fields with an integer type of a specific size doesn't make sense
anyway.
By default, only the main thread is used. If opj_codec_set_threads() is not used,
but the OPJ_NUM_THREADS environment variable is set, its value will be
used to initialize the number of threads. The value can be either an integer
number, or "ALL_CPUS". If OPJ_NUM_THREADS is set and this function is called,
this function will override the behaviour of the environment variable.
r2077 did expose too much of the detail implementation of OpenJPEG. Rework dependencies in between JPIP file level details and JPIP client/server arch.
Move JPIP file level functionalities back into OpenJP2 as was the case in openjpeg 1.5.x. Use new cio func.