mhixbox_manager.h File Reference

#include "byte_manager.h"
#include "box_manager.h"

Go to the source code of this file.

Data Structures
struct	markeridx_param
	Marker index parameters. More...
struct	mhixbox_param
	header index table box parameters More...

Typedefs
typedef struct markeridx_param	markeridx_param_t
	Marker index parameters. More...
typedef struct mhixbox_param	mhixbox_param_t
	header index table box parameters More...

Functions
mhixbox_param_t *	gene_mhixbox (box_param_t *box)
	generate mhix box More...
markeridx_param_t *	search_markeridx (Byte2_t code, mhixbox_param_t *mhix)
	search a marker index by marker code from mhix box More...
void	print_mhixbox (mhixbox_param_t *mhix)
	print mhix box parameters More...
void	print_markeridx (markeridx_param_t *markeridx)
	print marker index parameters More...
void	delete_mhixbox (mhixbox_param_t **mhix)
	delete mhix box More...

Typedef Documentation

typedef struct markeridx_param markeridx_param_t

Marker index parameters.

typedef struct mhixbox_param mhixbox_param_t

header index table box parameters

I.3.2.4.3 Header Index Table box

Function Documentation

void delete_mhixbox

(

mhixbox_param_t **

mhix

)

delete mhix box

Parameters

[in,out]

mhix

address of the mhix box pointer

References markeridx_param::next.

Referenced by delete_index(), and set_mainmhixdata().

mhixbox_param_t* gene_mhixbox

(

box_param_t *

box

)

generate mhix box

Parameters

[in]

box

pointer to the reference mhix box

Returns

generated mhixbox pointer

References markeridx_param::code, fetch_DBox2bytebigendian(), fetch_DBox8bytebigendian(), mhixbox_param::first, get_DBoxlen(), markeridx_param::length, markeridx_param::next, markeridx_param::num_remain, markeridx_param::offset, and mhixbox_param::tlen.

Referenced by set_mainmhixdata(), and set_thixdata().

void print_markeridx

(

markeridx_param_t *

markeridx

)

print marker index parameters

Parameters

[in]

markeridx

marker index pointer

References markeridx_param::code, markeridx_param::length, logstream, markeridx_param::num_remain, and markeridx_param::offset.

void print_mhixbox

(

mhixbox_param_t *

mhix

)

print mhix box parameters

Parameters

[in]

mhix

mhix box pointer

References markeridx_param::code, mhixbox_param::first, markeridx_param::length, logstream, markeridx_param::next, markeridx_param::num_remain, markeridx_param::offset, and mhixbox_param::tlen.

Referenced by print_index().

markeridx_param_t* search_markeridx	(	Byte2_t	code,
		mhixbox_param_t *	mhix
	)

search a marker index by marker code from mhix box

Parameters

[in]	code	marker code
[in]	mhix	mhix box pointer

Returns

found marker index pointer

References markeridx_param::code, FCGI_stderr, mhixbox_param::first, and markeridx_param::next.

Referenced by set_mainmhixdata().